Category Archives: b_original_articles

Original Articles

Screening and molecular identification of gelatinase-producing bacteria isolated from Indonesian mangrove ecosystem

A A Prihanto1,2,3*, H Nursyam1,3

1Department of Fishery Product Technology, Faculty of Fisheries and Marine Science, Brawijaya University, Jl. Veteran, Malang 65145, East Java, Indonesia

2 Halal Thoyib Research Center, Brawijaya University, Jl. MT Haryono, Malang 65145, East Java, Indonesia

3Bio-seafood Research Unit, Faculty of Fisheries and Marine Science, Brawijaya University, Jl. Veteran, Malang 65145, East Java, Indonesia

 

Abstract

The objective of this research was to isolate and identify gelatinase-producing bacteria from several mangrove ecosystems in Indonesia. Soil samples were collected from seven coastal locations of mangrove ecosystem in 2017. The gelatinase-producing bacteria were screened by using screening and confirmation methods. The gelatinase-producing bacteria were further analyzed by using the 16s rDNA molecular method. Ten isolates were diagnosed to be gelatinase-producing bacteria, which belonged to three genera: Lysinibacilus sp, Enterobacter sp. and Proteus sp. The isolated bacteria can further be investigated for the possibility of gelatinase production.

Keywords: Coastal, Gelatinase, Hydrolisate gelatin, Marine, Phylogenetic analysis

Food insecurity and its determinants in rural Khyber Pakhtunkhwa, Pakistan

Gulab Sher1, Fazli Rabbi2, Umar Hayat2*

1Department of Economics, University of Malakand, Dir (L), Pakistan

2Department of Economics and Development Studies, University of Swat, Swat, Pakistan

 

Abstract

This paper empirically examines the determinants of households’ food security in District Dir (Lower) Khyber Pakhtunkhwa. Primary data were gathered through a pre-structured questionnaire. The screening questions approach was adopted to solicit the information from a total of 200 households. The binary logistic regression was used for data analysis. Our results show that farm households with an employed head, and having improved access to farm and non-farm income, are more likely to be food secure. While larger sized farm households located away from the main stream markets, are more likely to be food insecure. We conclude that households’ access to a secure source of income and markets have a significant influence to ameliorate the food security in rural areas. The policy is informed to improve households’ access to farm and non-farm income vis-à-vis accessibility to the main stream markets. We recommend that interventions are needed to enhance off-farm employment opportunities, make the agriculture technology more accessible to farmers, and develop the physical infrastructure in rural areas. The findings of the study have significant policy implications in the context of food security in other developing countries.

Keywords: Food security, Binary logistic regression, Households’ assets, Income

Promoting reforestation through supplementing native forest tree species in northwestern Vietnam

Hoang Van Thang1, Dang Thinh Trieu2, Hoang Van Thanh2, Phung Dinh Trung2, Cao Van Lang1, Nguyen Trong Dien3, Tran Van Do2,4*

1Science and Planning Management Department, Vietnamese Academy of Forest Sciences, Hanoi, Vietnam

2Silviculture Research Institute, Vietnamese Academy of Forest Sciences, Hanoi, Vietnam

3Forest Science Centre of North-Eastern Vietnam, Vietnamese Academy of Forest Sciences, Ngoc Thanh, Phuc Yen Town, Vinh Phuc, Vietnam

4Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, Japan

Abstract

Forest enrichment and/or supplement planting is a silvicultural technique to improve number of valuable trees in natural poor forests. In this study, two native species including Canarium album (Lour.) Raeusch and Cinnamomum obtusifolium (Roxb.) Nees were planted in fallow stands by two experiments as planting in clear band of 6 m wide (band planting) and in canopy gaps of >200 m2 (cluster planting). The results indicated that planted trees of both species in both planting experiments had high survival rates (>89%) after planting three years, and more than 75% survival trees had good quality as straight boles without diseases. The difference of stump diameter and stem height between experiments and species was statistically significant. C. obtusifolium in band planting had biggest stump diameter (2.86 cm), while C. album in band planting had tallest stem height (2.69 m) after planting three years. C. obtusifolium had significantly larger crown diameter in band planting (1.09 m) than that in cluster planting (0.92 m). While it was conversely found in C. album as significantly larger crown diameter was found in cluster planting (1.12 m) compared to smaller one in band planting (0.96 m). It is concluded that silvicultural techniques are required to promote growth of planted trees after planting three years, especially for C. album as it requires more sunlight at this age. The techniques must focus on opening forest canopy for sunlight reaching crown of planted trees and on removing bad-growth trees surrounding planted trees to minimize competitions.   

Keywords: Fallow land, Forest gap, Growing space, Sustainable management, Timber species

Influence of some plant oils Eugenia caryophyllata, Elettaria cardamomum and Citrus sinensis on the termite species Coptotermes heimi

Ayesha Aihetasham, Aysha Anayat, Muhammad Xaaceph

Department of Zoology, University of the Punjab, Lahore, Pakistan

Abstract

Termites are one of the most troublesome pest of plants, trees, wooden infrastructure and agricultural crops. The aim of the present study is to evaluate the population of some plant oils using Eugenia caryophyllata, Elettaria cardamomum and Citrus sinensis against Coptotermes heimi (Wasmann) at Punjab University, New Campus Lahore, Pakistan. All plants were effectively toxic against C. heimi as 100 % mortality was observed at 62.5, 125 and 250 µl/ml doses within three to four days of exposure. All plant oils extracts proved to be highly repellent to the termites even in the low concentrations. These plant oils can be used for effective termite control being less expensive and biodegradable, hence environmentally suitable.

Keywords: Termites, Plant extracts, Repellency

Isolation and in silico characterization of cinnamate 4-hydroxylase (C4H) gene controlling the early stage of phenylpropanoid biosynthetic pathway in Kelampayan (Neolamarckia cadamba, Rubiaceae) developing xylem tissues

Boon Ling – Tchin, Wei Seng – Ho*, Shek Ling – Pang

Forest Genomics and Informatics Laboratory (fGiL), Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300, Kota Samarahan, Sarawak, Malaysia

Applied Forest Science and Industry Development (AFSID), Sarawak Forestry Corporation, 93250 Kuching, Sarawak, Malaysia

 Abstract

Cinnamate 4-hydroxylase (C4H) is one of the enzymes involved at the starting point of the phenylpropanoid and lignin biosynthesis pathway. It involves in the hydroxylation of cinnamate to 4-coumarate. In this paper, we isolated and in silico characterized the complete sequence of cinnamate 4-hydroxylase (C4H) gene from Neolamarckia cadamba in Malaysia. The C4H singletons obtained from the NcdbEST were used to predict the hypothetical full-length of NcC4H through the contig mapping approach. RT-PCR was used to amplify the full-length C4H cDNA clone and subsequently the PCR amplicons were sequenced and analysed. The NcC4H cDNA was 1,651 bp long with a 505 amino acid sequence, a 18 bp 5’-UTR and a 115 bp 3’-UTR. The predicted NcC4H protein contains P450-featured motifs. These include the heme-binding domain, a threonine-containing binding pocket motif and the proline-rich region. Peptide sequence comparison and phylogenetic analyses revealed that NcC4H was clustered with class I C4H instead of class II C4H, which is preferentially involved in phenylpropanoid and lignin biosynthesis pathway. This full-length NcC4H cDNA can be used for developing genetic marker to identify economic trait loci (ETL) for wood quality traits via genomics-assisted selection (GAS) or candidate gene mapping approach.

Keywords: Neolamarckia cadamba, RT-PCR, Lignin biosynthesis, Cinnamate 4-hydroxylase (C4H), Expressed sequence tags (ESTs), Genomics-assisted selection

Functional response of the predatory mite Cydnoseius negevi (Swirski & Amitai) (Acari: Phytoseiidae) to the Oligonychus afrasiaticus (Mcgregor) and Tetranychus urticae Koch (Acari: Tetranychidae)

 

Fahad J. Alatawi1, Syed Zain ul Abidin1, Jawwad H. Mirza1, Muhammad Kamran1

1Department of Plant Protection, College of Food and Agriculture Sciences, King Saud University, KSA

 Abstract


The study of functional response characteristics of natural enemies is one of the most important approaches to assess their efficiency in regulating the pest population as they are key aspects in the dynamics of predator-prey interactions. In the present study, the functional response type and parameters, and maximum feeding capacity of the predatory mite Cydnoseius negevi (Swirski & Amitai) (Acari: Phytoseiidae)  deutonymph and adult female were assessed at different densities of movable stages of the date palm mite (DPM) Oligonychus afrasiaticus (McGregor) and two-spotted spider mite (TSSM) Tetranychus urticae Koch (Acari: Tetranychidae). The experiments were carried out at 30 ± 2°C and relatively low humidity of 35 ± 5 % RH under controlled conditions, for the first time. The logistic regression model was used to determine the type of functional response exhibited by C. negevi. Both the stages of predator showed Type II functional response when fed the DPM and TSSM individuals at different stages. Roger’s random-predator equation was used to define the handling time (Th) and attack rate (a) coefficients of type II functional response by fitting the equation into the non-linear least square regression model. The longest Th was shown by deutonymph and adult females of C. negevi when they fed on the DPM and TSSM females, and TSSM females, respectively. Furthermore, no significant differences were recorded for most of the a values of the deutonymph and adult female of C. negevi among different stages of DPM and TSSM. The maximum feeding capacity of  C. negevi adult female was significantly higher for DPM female when compared with that of TSSM. According to previous and current studies, C. negevi could be a potential predator at a wide range of humidity. 

Keywords: Biological control, Prey, Density, Feeding capacity, Handling time, Attack rate

Screening of breeding lines of Brassica napus L. tolerant to grain shattering

Tamoor Hussain1*, Muhammad Azeem Tariq1, Ramzan Ansar1, Muhammad Tariq1, Ahmad Sher2

1Barani Agricultural Research Institute, Chakwal, Pakistan

2Department of Agronomy, BZU, Bahadar Sub Campus, Layyah, Pakistan

 Abstract

Shattering causes huge losses to Brassica even if harvesting is done mechanically. To study the shattering tolerance in different rapeseeds lines, a study was conducted in split plot design at experimental area of Barani Agricultural Research Institute (BARI) Chakwal, Pakistan during two winter season 2014-15 & 2015-16 under the rainfed conditions. The experimental material comprised of 10 advanced lines including one local variety of rapeseed viz: 8CBN001, 8CBN002, 10CBN003, 10CBN005, 11CBN001, 11CBN003, 11CBN009, 11CBN011, 12CBN003 and Chakwal Sarsoon The main experimental plot was harvested at four different harvesting dates (HD) including:  HD1 = Harvesting of each advanced line at crop maturity, HD2= 10 days after the first harvesting (DAFH), HD3= 20 DAFH, HD4= 30 DAFH. The comparison of difference between the grain yield of each advanced line at various harvesting dates with its seed yield at first harvesting date (HD1-HDi) were calculated as indices of pods shattering. Combined analysis of variance depicted that all the genotypes were significantly different for HD, harvesting date and advanced lines interaction effect, year and its interaction effects to each factors. The significant difference of genotypes into harvesting dates demonstrated various level of pods shattering of all advanced lines at different harvesting dates. The amount of grain yield due to shattering losses was increased at third and fourth harvesting dates. On the basis of shattering tolerance indices, advanced line 10CBN005 was more tolerant to shattering losses and 8CBN002 was more susceptible to shattering as compared to others promising genotypes.

Keywords: Shattering tolerance, Rapeseed, Harvesting date

Effect of soil tillage and mycorrhiza application on growth and yields of upland rice in drought condition

Laila Nazirah1, 2*, Edison Purba3, Chairani Hanum3, Abdul Rauf3


1Doctoral Program of Agricultural Sciences, Faculty of Agriculture, Universitas Sumatera Utara, Padang Bulan, Medan 20155, Indonesia.


2Lecture Faculty of Agriculture, Malikussaleh University, Indonesia.


3Lecture Program Study of Agriculture, Universitas Sumatera Utara, Padang Bulan, Medan 20155 Indonesia.

 Abstract

Dry land management technology for food crop agriculture with soil conservation, organic matter management, and water management. This study aims to determine the effect of soil treatment and mycorrhiza on growth and yield of upland rice in drought stress conditions. This experiment uses the Split Split Plot design consists of 3 factors: The first factor as the main plot of mycorrhizas consisting of no mycorrhizal and mycorrhizal administration. The second factor as a plot is the soil cultivation consisting of no soil preparation) and treatment. The third factor as Multiplication Children is Varieties consisting of three groups of varieties namely Toleran group (Ciapus Varieties, Inpago Varieties 4 and Varieties inpago 8) moderate varieties group include (Inpago Varieties 5, Varietas situ bagendit, Inpago Varieties 7 and Varietas towuti) and the susceptible varieties are (In jari 6 varieties, Inpari 33 varieties and synthetic varieties). Treatment without tillage and without mycorrhiza decreased leaf area, root canopy ratio, leaf proline content, degree of root infection and dry grain production. Soil sampling and mycorrhizal fertilization of Inpago 4 tolerant varieties showed a mechanism of avoidance against drought stress by increasing leaf area, root canopy ratio, leaf proline content and root infection. The highest dry grain production was found in the tolerant (Inpago 4) varieties group of 7.5 tons per ha and can be planted in drought stress conditions at rainfall ± 3.2 mm / day. 

Keywords: Upland, Rice, Land Preparation, Mycorrhiza, Soil treatment

Comparison of response of F4 and F3 generations of tomato from year to year selection

 

Mehboob Ahmad1*, Bilal Ahmed Khan1, Mazhar Iqbal1, Maria Saleem1, Farhad Ahmad2,Muhammad Shahid2, Adil Rehman2, Ihsan Ullah1 and Akhtar Nawaz1.

1Hazara Agricultural Research Station, Abbottabad, Pakistan

2Agricultural Research Station, Baffa, Mansehra, Pakistan

 Abstract


Segregating breeding generations may fluctuate in performance from year to year. The purpose of our study was to evaluate the performance of these generations in each year and to make selection according to the existing environmental conditions. The research was conducted in two consecutive years (2016 and 2017) and the performance of F3 and F4 generations was analyzed. It was found that mean values of all the studied parameters in F4 population, in this study, were lower than the mean values of F3 generation, however maximum range in F4 exceeded F3 for some parameters. The selection differential values were also found as negative. Va(Additive variance) values for all the parameters in F3 and F4 generations were found to be almost same PCV(Phenotypic coefficient of variation) for most of the parameters in F4, like yield/plant, fruits/plant, fruit/cluster and fruit length exceeded the PCV values in F3.Highest value of heritability was noted for yield/plant in F4 while in F3 highest value was observed for fruit weight. Heritability percentage and genetic advance for all the parameters in F3 was higher than F4.Mean difference values indicated that some of the F4 lines were higher than the grand mean of F4 population (in all the studied parameters). Additionally, means of few F4 lines were also found to be greater than the means of F3 population for most of the parameters. These results may indicate that these lines could be selected for better performance if advanced to next generation. 

Keywords: Tomato Lines, Performance, Quantitative Traits, Heritability, Genetic Advance

Comparative the impact of organic and conventional strawberry cultivation on growth and productivity using remote sensing techniques under Egypt climate conditions

Hassan A. Hassan1, Sahar S.Taha1, Mohamed A. Aboelghar2, Noha A. Morsy2

1Department of Vegetables, Faculty of Agriculture, Cairo University, Cairo, Egypt

2National Authority for Remote Sensing and Space Sciences (NARSS), Cairo, Egypt

 Abstract

Two years field experiment on strawberry plants (cv. Sweet Charlie) in Qalyubia Governorate, Egypt was carried out to study the effect of different growing conditions (organic and conventional) and the effect of some colors of plastic mulch such as clear, black, and silver on the quantitative and qualitative characteristics of the strawberry plantations using hyper spectral remotely sensed data. As the first step, spectral reflectance pattern for the different treatments (fertilization and colors of plastic mulch) was identified through in situ spectral measurements. It was found that silver plastic mulch recorded higher values with all observed vegetative and fruit traits, as compared with an organic strawberry growing systems without plastic mulch. Spectral reflectance parameters in form of vegetation indices (VIs) were examined as yield estimators and their correlation with leaf area index (LAI) was observed. Generated models with accuracy assessment were explained and the optimal vegetation index to estimate yield under each treatment was identified. Generally, it was found that fertilization has more effect on spectral characteristics than plastic mulch. Spectral vegetation indices (VIs) showed higher accuracy than LAI as yield estimators. (Spectral – yield) models showed the same trend with adequate correlation coefficient (r2) exceeded (0.7) except the treatment of black plastic mulch conventional system that showed (r2) less than (0.6) with two yield estimators. All generated models with an accuracy of each model are explained in the following sections. 

Keywords: Strawberry, Spectral Reflectance, Vegetation Index, LAI, Yield